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	<front>
		<journal-meta>
			<journal-id journal-id-type="publisher-id">agc</journal-id>
			<journal-title-group>
				<journal-title>Agronomía Colombiana</journal-title>
				<abbrev-journal-title abbrev-type="publisher">Agron. colomb.</abbrev-journal-title>
			</journal-title-group>
			<issn pub-type="ppub">0120-9965</issn>
			<publisher>
				<publisher-name>Universidad Nacional de Colombia, Facultad de Agronomía</publisher-name>
			</publisher>
		</journal-meta>
		<article-meta>
			<article-id pub-id-type="doi">10.15446/agron.colomb.v34n3.57950</article-id>
			<article-categories>
				<subj-group subj-group-type="heading">
					<subject>Agroecology</subject>
				</subj-group>
			</article-categories>
			<title-group>
				<article-title>Presence of mycorrhizal fungi and a fluorescent <italic>Pseudomonas</italic> sp. in the rhizosphere of cacao in two agroecosystems and their effects on cacao seedling growth</article-title>
				<trans-title-group xml:lang="es">
					<trans-title>Presencia de hongos micorrízales y una <italic>Pseudomonas</italic> sp. fluorescente en la rizosfera de cacao en agroecosistemas y sus efectos en el crecimiento de plántulas de cacao</trans-title>
				</trans-title-group>
			</title-group>
			<contrib-group>
				<contrib contrib-type="author">
					<name>
						<surname>Ramírez</surname>
						<given-names>Joaquín Guillermo</given-names>
					</name>
					<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
					<xref ref-type="corresp" rid="c1"><sup>3</sup></xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Osorno</surname>
						<given-names>Laura</given-names>
					</name>
					<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
				</contrib>
				<contrib contrib-type="author">
					<name>
						<surname>Osorio</surname>
						<given-names>Nelson Walter</given-names>
					</name>
					<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
				</contrib>
			</contrib-group>
			<aff id="aff1">
				<label>1</label>
				<institution content-type="original"> Programa de Doctorado, Universidad Nacional de Colombia, Medellín (Colombia).</institution>
				<institution content-type="normalized">Universidad Nacional de Colombia</institution>
				<institution content-type="orgname">Universidad Nacional de Colombia</institution>
				<addr-line>
					<named-content content-type="city">Medellín</named-content>
				</addr-line>
				<country country="CO">Colombia</country>
			</aff>
			<aff id="aff2">
				<label>2</label>
				<institution content-type="original"> Escuela de Biociencias, Facultad de Ciencias, Universidad Nacional de Colombia, Medellín (Colombia).</institution>
				<institution content-type="normalized">Universidad Nacional de Colombia</institution>
				<institution content-type="orgname">Universidad Nacional de Colombia</institution>
				<addr-line>
					<named-content content-type="city">Medellín</named-content>
				</addr-line>
				<country country="CO">Colombia</country>
			</aff>
			<author-notes>
				<corresp id="c1">
					<label><sup>3</sup></label>Corresponding author: <email>jgramireg@unal.edu.co</email>
				</corresp>
			</author-notes>
			<pub-date pub-type="epub-ppub">
				<season>Sep-Dec</season>
				<year>2016</year>
			</pub-date>
			<volume>34</volume>
			<issue>3</issue>
			<fpage>385</fpage>
			<lpage>392</lpage>
			<history>
				<date date-type="received">
					<day>09</day>
					<month>06</month>
					<year>2016</year>
				</date>
				<date date-type="accepted">
					<day>30</day>
					<month>06</month>
					<year>2016</year>
				</date>
			</history>
			<permissions>
				<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc-sa/4.0/" xml:lang="en">
					<license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License</license-p>
				</license>
			</permissions>
			<abstract>
				<title>ABSTRACT</title>
				<p>In recent years the cultivation of cacao <italic>(Theobroma cacao</italic> L.) in Colombia has been growing up, resulting in the need to develop a sustainable production system. In this regard, ben eficial soil microorganisms are an alternative for improving plant productivity, but this requires knowledge of their ecology and functioning. This study had the objective of identify and quantify arbuscular mycorrhizal fungi (AMF) and fluorescent <italic>Pseudomonas</italic> sp. associated with the soil and rhizosphere of cacao plants in two agroecosystems, one of them was in a tropi cal dry forest (TDF) and the other in a tropical moist forest (TMF). In a second stage of the study, native strains of <italic>Glomus</italic> sp., <italic>Acaulospora</italic> sp., and fluorescent <italic>Pseudomonas</italic> sp. were se lected and multiplied in the lab. Subsequently, the effectiveness of these strains to promote cacao seedling growth was tested in a greenhouse experiment. The results indicate that there was a significant (P&lt;0.05) greater mycorrhizal colonization and diversity associated to the roots of cacao growing in agroeco systems of the tropical moist forest. However, not significant differences were detected regarding the presence of fluorescent <italic>Pseudomonas</italic> sp. in the two agroecosystems. Otherwise, in the greenhouse experiments, the inoculation with the mycorrhizal fungus <italic>Glomus</italic> sp. was the only treatment that promoted the cacao seedling growth.</p>
			</abstract>
			<trans-abstract xml:lang="es">
				<title>RESUMEN</title>
				<p>En los últimos años, el cultivo de cacao <italic>(Theobroma cacao</italic> L.) en Colombia viene creciendo, esto hace necesario desarrollar un sistema de producción sostenible. Es así, como los micro organismos benéficos del suelo son una excelente alternativa para mejorar la productividad de la planta, pero es importante conocer su funcionamiento y ecología. Este trabajo tuvo como objetivo identificar y cuantificar hongos micorrízicos arbus culares (HMA) y <italic>Pseudomonas</italic> sp. fluorescente associados al suelo y la rizosfera de plantas de cacao en dos agroecosistemas, bosque seco tropical (BST) y bosque húmedo tropical (BHT). En una segunda etapa del trabajo se seleccionaron y multiplicaron cepas nativas de <italic>Glomus</italic> sp., <italic>Acaulospora sp.,</italic> y <italic>Pseudomonas</italic> sp. fluorescente en el laboratorio. Asi la efectividad de estas cepas para promover el crecimiento de plántulas de cacao bajo condiciones de invernadero fue evaluada. Los resultados indican que hubo una diferencia significativamente (P&lt;0.5) mayor en la colonización micorrizal y diversidad asociada a raíces de cacao creciendo en el agroeosistema asociado al bosque húmedo tropical. Sin embargo, no se encontraron dife rencias significativas asociados a la presencia a <italic>Pseudomonas</italic> sp. fluorescente asociados a los dos agroecosistemas. Por otro parte en los experimentos en invernadero, la inoculación con el hongo micorrízico <italic>Glomus</italic> sp. fue el único tratamiento que promovió el crecimiento de plántulas de cacao.</p>
			</trans-abstract>
			<kwd-group xml:lang="en">
				<title>Key words:</title>
				<kwd>tropical dry forest</kwd>
				<kwd>tropical moist forest</kwd>
				<kwd><italic>Glomus</italic> sp.</kwd>
			</kwd-group>
			<kwd-group xml:lang="es">
				<title>Palabras claves:</title>
				<kwd>bosque húmedo tropical</kwd>
				<kwd>bosque seco tropical</kwd>
				<kwd><italic>Glomus</italic> sp.</kwd>
			</kwd-group>
			<counts>
				<fig-count count="3"/>
				<table-count count="2"/>
				<equation-count count="0"/>
				<ref-count count="55"/>
				<page-count count="8"/>
			</counts>
		</article-meta>
	</front>
	<body>
		<sec sec-type="intro">
			<title>Introduction</title>
			<p>Cacao <italic>(Theobroma cacao</italic> L.) is a neotropical plant spe cies originated from the humid tropics of America, and thus presents great diversity in this zone (<xref ref-type="bibr" rid="B15">Enriquez, 2004</xref>; <xref ref-type="bibr" rid="B31">Motamayor et al. 2008</xref>). In Colombia, the cacao is cultivated in soils with different biological, physical, and chemical characteristics (<xref ref-type="bibr" rid="B48">Suarez et al., 2010</xref>). Most of the soils in the tropical areas present low nutrient availability, which results in low crop productivity (<xref ref-type="bibr" rid="B8">Brady and Weil, 2008</xref>; <xref ref-type="bibr" rid="B30">Meason et al., 2009</xref>; <xref ref-type="bibr" rid="B32">Osorio, 2011</xref>). This condition leads to add high doses of chemical, mineral, and organic fertil izers in order to improve yields, but the excessive use of these supplies can increase productions costs and generate negative environmental impacts (Brady and Weil, 2008; <xref ref-type="bibr" rid="B53">Xiao et al., 2008</xref>).</p>
			<p>Arbuscular mycorrhizal fungi (AMF) are considered to be of great importance for adequate plant development, since they can improve water and nutrient uptake, particu larly phosphorus (P) (<xref ref-type="bibr" rid="B32">Osorio, 2011</xref>; <xref ref-type="bibr" rid="B41">Ramírez et al., 2013</xref>; Ramírez <italic>et al.,</italic> 2014; Ramírez <italic>et al.,</italic> 2015). This is relevant because in the tropics approximately 71% of plant species form arbuscular mycorrhizal association, 16% form other types of mycorrhizal associations, and only 13.4% are non-mycorrhizal (<xref ref-type="bibr" rid="B11">Coyne, 2000</xref>; <xref ref-type="bibr" rid="B4">Barea and Azcon, 2002</xref>). Among the first ones, it is well known the ability of cacao plants to form mycorrhizal associations and increase plant growth (<xref ref-type="bibr" rid="B1">Azizah-Chulan and Martin, 1992</xref>).</p>
			<p>On the other hand, some bacteria from the <italic>Pseudomonas</italic> genus are known as plant growth promoters. They can colonize plant root systems and promote plant growth by (i) nutrient solubilization (e.g., P, Fe, among others), (ii) synthesizing hormonal regulators such as auxins and gibberellins (<xref ref-type="bibr" rid="B20">Gunes et al., 2015</xref>; <xref ref-type="bibr" rid="B37">Pii et al., 2015</xref>) and (iii) decrease phytopathogens populations in the soil and thus prevent plant diseases (<xref ref-type="bibr" rid="B21">Hallmann et al., 1997</xref>; <xref ref-type="bibr" rid="B52">Van Veen et al., 1997</xref>; <xref ref-type="bibr" rid="B29">Lugtenberg and Kamilova, 2009</xref>).</p>
			<p>However, few researches exist about the presence of both types of these microorganisms in cacao plantations in contrasting environmental conditions, as those imposed by the TDF and TMF life zones, which certainly limits the application of these microorganisms at a commercial scale (<xref ref-type="bibr" rid="B12">Cuadros et al., 2011</xref>). For this reason, the present study had two objectives (i) identifying and quantifying AMF and strains of fluorescent <italic>Pseudomonas</italic> sp. in the rhizosphere of cacao plants in two agroecosystems of contrasting life zones: tropical dry forest (TDF) and tropical moist forest (TMF); and (ii) to evaluate the effectiveness of inoculation with these two groups of microorganisms on cacao plant growth in greenhouse.</p>
		</sec>
		<sec sec-type="materials|methods">
			<title>Materials and methods </title>
			<sec>
				<title>Sampling sites</title>
				<p>Soil samples were collected from two sites: (i) Santa Fe de Antioquia at the Cotove Agriculture Experimental Station (altitude 540 m a.s.l., annual rainfall 900 mm, mean air temperature 27°C and relative humidity 75.5%) located at 6°32'55&quot;N and 75°50'3&quot;W, which corresponds the TDF ecological life zone according to <xref ref-type="bibr" rid="B24">Holdridge (1967</xref>); (ii) Ma ceo at the Theobroma farm (altitude 1,050 m a.s.l., annual rainfall 2,500 mm, mean air temperature 20°C, relative humidity 93%) located at 6°32'43&quot;N and 74°47'27&quot;W, which represent the TMF ecological life zone. Samples were transported to the Soil Laboratory of the Universidad Nacional de Colombia at Medellin for microbial processing. Greenhouse experiments were carried out in the same university (6°15'47&quot;N and 74°34'40&quot;W).</p>
			</sec>
			<sec>
				<title>Soil sampling and testing</title>
				<p>In each location four plots were selected and five trees of the IMC-67 (rootstock) and CCN-51 (scion) clones were randomized and chosen for sampling their rhizosphere. Surface soil (0-30 cm) and root fragments were taken 1 m away from the tree stem; from each plot 1 kg of soil and 50 g of roots were collected. Soil sampling was conducted at the Soil Fertility Laboratory at the same university; the results are shown in <xref ref-type="table" rid="t1">table 1</xref> href=&quot;?v34n3a10&quot;&gt; .</p>
				<p>
					<table-wrap id="t1">
						<label>TABLE 1</label>
						<caption>
							<title>Soil fertility parameters from each cacao agroecosystem.</title>
						</caption>
						<table-wrap-foot>
							<fn id="TFN1">
								<p>Methods: texture by Bouyoucos; soil pH measured in water (2:1, V:V); soil organic matter (SOM) measured by Walkley and Black; Al extracted by 1 <italic>M</italic> KCl; Ca, Mg, and K extracted by 1 <italic>M</italic> ammonium acetate; P extracted by Bray II; soil solution P measured in 0.01 <italic>M</italic> CaCl2.</p>
							</fn>
						</table-wrap-foot>
					</table-wrap>
				</p>
			</sec>
			<sec>
				<title>AMF isolation, counting, identification, and root colonization</title>
				<p>AMF spores were isolated using the wet sieving and de canting method described by Gerdemman and Nicholson (1963). Briefly, it consists of passing 20 g of soil sample through a set of sieves (425, 90, and 25 µm). The portion retained in each sieve was suspended with 50 mL of water and then centrifuged for two min at 2,000 rpm. The pre cipitate was suspended in 50 mL of a 50% sucrose solution and centrifuged again for five min at 4,000 rpm. The su pernatant obtained was passed through a filter paper for spore counting using a microscope (Nikon Eclipse E200). AMF identification was based in taxonomic keys (<xref ref-type="bibr" rid="B10">Clap et al., 1995</xref>; <xref ref-type="bibr" rid="B23">Heijden et al., 2004</xref>; <xref ref-type="bibr" rid="B35">Peterson et al., 2004</xref>). The Shannon diversity index was constructed using the PAST program, version 2.16 (<xref ref-type="bibr" rid="B22">Hammer et al., 2001</xref>).</p>
				<p>Root mycorrhizal colonization was conducted after clear ing root fragments (1 cm length) with 10% KOH for 24 h (<xref ref-type="bibr" rid="B34">Phillips and Hayman, 1970</xref>) and then settled down in an alkaline solution (0.5% NH4OH and 0.5% H2O2) for 30 minutes (<xref ref-type="bibr" rid="B9">Brundrett and Abbott, 1995</xref>). Root fragments were washed with tap water and then acidified with 10% HCl for five min. After that, roots fragments were stained with 0.025% trypan, blue dissolved in lacto-glycerol (<xref ref-type="bibr" rid="B27">Kormanik et al., 1980</xref>) and the extension of roots colonized by the AMF was measured by the line-intercept method (<xref ref-type="bibr" rid="B18">Giovannetti and Mosse, 1980</xref>).</p>
			</sec>
			<sec>
				<title>Fluorescent <italic>Pseudomonas</italic> sp.</title>
				<p>Rhizosphere samples were diluted with sterile water up to 10<sup>-4</sup> serial dilution; 100 |iL of the 10<sup>-3</sup> and 10<sup>-4</sup> serial dilu tions were transferred onto <xref ref-type="bibr" rid="B26">King B (KB) culture medium in Petri dishes (King et al., 1954</xref>). The grouth medium was supplemented with ampicillin (50 mg L<sup>-1</sup>) and chlo-ramphenicol (12.5 mg L<sup>-1</sup>) (<xref ref-type="bibr" rid="B47">Simon and Ridge, 1974</xref>). Petri dishes were incubated for 48 h at 28°C. Positive colonies were considered those capable of producing fluorescent pigment under ultraviolet light (260 nm) (<xref ref-type="bibr" rid="B40">Ramírez, 2005</xref>).</p>
			</sec>
			<sec>
				<title>Greenhouse experiments So/7</title>
				<p>Surface soil sample (0-30 cm) was collected from the Carimagua Experimental Station (USDA Soil Taxonomy Oxisol, Haplustox). It was analyzed in the Soil Fertility Laboratory at the same university and with the same methods. Soils results were: sand 480, silt 200, and clay 320 g kg<sup>-1</sup> (Bouyoucos), pH 4.8 (water, 2:1), SOM 60 g kg<sup>-1</sup>, Al 0.9 cmol<sub>c</sub> kg<sup>-1</sup> (1<italic>M</italic> KCl); Ca, Mg, and K 1.1, 0.4, and 0.2 (1 <italic>M</italic> ammonium acetate).</p>
				<p>In order to avoid microbial interference, the soil was steril ized in an autoclave at 0.1 MPa and 121°C, for two cycles of one hour each. Lime was added to adjust soil pH at 5.6, based on the lime incubation method (<xref ref-type="bibr" rid="B51">Uchida and Hue 2000</xref>). Based on a P sorption isotherm (<xref ref-type="bibr" rid="B16">Fox and Kamprath, 1970</xref>), KH<sub>2</sub>PO<sub>4</sub> was added to achieve a soil solution P con centration of 0.02 mgL<sup>-1</sup>, which is considered optimal for mycorrhizal activity.</p>
			</sec>
			<sec>
				<title><italic>Cacao plants</italic></title>
				<p>At 50 d seeds of the IMC-67 clone germinated in peat until developing 5 leaves. Then two seedlings were transplanted into plastic pots containing 2 kg of the soil. One month later, one plant was removed. The plants were kept for other four months in greenhouse conditions and were frequently watered to maintain soil moisture content between 50-60% of the soil's maximum water retention capacity. Every week 50 mL of a P-free Hoagland solution was added.</p>
			</sec>
			<sec>
				<title>Microorganisms</title>
				<p>For this experiment, we used two mycorrhizal inocula, one inoculum contained spores of the genus <italic>Glomus</italic> sp. and the other spores of the genus <italic>Acaulospora</italic> sp., it is also called <italic>Rhizoglomus</italic> (<xref ref-type="bibr" rid="B45">Sieverding et al., 2015</xref>) and <italic>Rhizofagus</italic> (Schufiler and Walker, 2010). These were selected since both genera were the most abundantly in the plots evaluated in the field. Both AMF were multiplied in corn roots until reaching a minimum concentration of 45 infective propa-gules per g of inoculum (<xref ref-type="bibr" rid="B38">Porter, 1979</xref>).</p>
				<p>Several isolates of fluorescent <italic>Pseudomonas</italic> sp. were tested for their capability to produce indoleacetic acid using Salkowski indicator solution (<xref ref-type="bibr" rid="B19">Gordon and Weber, 1951</xref>). The solution was modified for use in bacterial culture supernatants (<xref ref-type="bibr" rid="B33">Patten and Glick, 2002</xref>). Additionally, the bacteria <italic>Ralstonia solanacearum</italic> was used as a control strain (C). This was conducted to select the isolate with the highest production of indole-acetic acid. The isolate selected (designed as P10) was multiplied in KB medium for 48 h at 28°C and suspended in sterile water; the bacterial suspension contained 1x10<sup>6</sup> colony forming units (CFU) per mL (<xref ref-type="bibr" rid="B25">Jena, 2012</xref>).</p>
			</sec>
			<sec>
				<title>Treatments and variables</title>
				<p>The treatments evaluated were: (i) inoculation with <italic>Acau lospora</italic> sp. (designated as &quot;A&quot;) at a rate of 70 g of inoculum per 2 kg of soil and mixed throughout, (ii) inoculation with <italic>Glomus</italic> sp. (designated as &quot;G&quot;) at a same rate; (iii) inoculation with fluorescent <italic>Pseudomonas</italic> sp. (P10) at a rate of 5 mL per plant; (iv) inoculation with <italic>Acaulospora</italic> sp. + fluorescent <italic>Pseudomonas</italic> sp. (A+P10) at the same rates described above; (v) inoculation with <italic>Glomus</italic> sp. + fluo rescent <italic>Pseudomonas</italic> sp. (G+P10); (vi) an not inoculated control (control) was included as a reference. All inocula were added at the transplanting time. Each treatment had five replicates.</p>
				<p>The response variables were: plant dry weight after oven-dry a 60°C for 72 h, foliar P concentration using the non destructive method developed by <xref ref-type="bibr" rid="B2">Aziz and Habte (1987</xref>), and root mycorrhizal colonization as described above. Additionally, the fluorescent <italic>Pseudomonas</italic> sp. bacterium was recovered from the rhizosphere in order to confirm its presence.</p>
			</sec>
			<sec>
				<title>Statistical analysis</title>
				<p>In each experiment (sampling and greenhouse) a completely randomized design was used. Levene and Kolmogorov-Smirnov criteria were used to confirm data homoscedasticity and normality (P&lt;0.05), respectively. The Ramirez, Osorno, and Osorio: Presence of mycorrhizal fungi and a fluorescent <italic>Pseudomonas</italic> sp. in the rhizosphere of cacao in two agroecosystems and their effects... data were subjected to analysis of variance and the Tukey test for mean separation both with a significance level P&lt;0.05. Statistical analysis was performed with the soft ware R (R version 3.2.3 (2015-12-10) &quot;Wooden Christmas-Tree&quot; Copyright (C) 2015 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit).</p>
			</sec>
		</sec>
		<sec sec-type="results|discussion">
			<title>Results and discussion</title>
			<p>The two agroecosystems exhibited a significant difference in soil parameters; for instance, soil pH in Maceo was extremely acidic (4.7), whereas in Santa Fe the soil pH was neutral (6.7) (<xref ref-type="table" rid="t2">Tab. 2</xref>). Consistently, the soil solution P in Maceo was very low (0.011 mg L<sup>-1</sup>) and in Santa Fe was high (0.240 mg L<sup>-1</sup>). Despite of these contrasts, not significant difference was detected in the foliar P concentration of cacao plants. Similarly, there was not significant difference in the CFU of <italic>Pseudomonas</italic> spp.</p>
			<p>The soil test results are consistent with the typical soil fertility parameters commonly found in these two life zones. For instance, Maceo soils are very acidic and poor in available P as a result of leaching out of bases (Ca, Mg, K, Na) produced by a high rainfall regime and is rich in Al as a result of high weathering rates, which generate oxides of Al and Fe that held P in unavailable forms for plant roots. By contrast, Santa Fe soil has a neutral soil reaction and is rich in available P, this associated with low weathering, low rainfall and the consequent dominance of 2:1 clays (e.g., montmorillonite, vermiculite) that retain high amounts of exchangeable bases (<xref ref-type="bibr" rid="B55">Zapata, 2002</xref>).</p>
			<p>Mycorrhizal colonization was significant different between both agroecosystems, in Maceo was 12.1% and in Santa Fe was 3.7%. Accordingly, the number of AMF spores was significantly higher in Maceo (16.2) than in Santa Fe (12.8).</p>
			<p>Both agroecosystems showed similar AMF genera, but their relative distribution was different (<xref ref-type="fig" rid="f1">Fig. 1</xref>). Although, <italic>Glomus</italic> genus is more abundant than the other genera, in Maceo it represented almost half AMF population, while in Santa Fe it was three quarters of the AMF population. <italic>Acaulospora</italic> genus was the second in abundance in both agroecosystems (9-24%), followed by <italic>Gigaspora</italic> (8-11%) and by the other two genera <italic>(Scutellospora, Entrophospora).</italic> These differences were satisfactorily reflected in Shanon Index (<xref ref-type="table" rid="t2">Tab. 2</xref>), which was significantly higher in Maceo (1.82) than in Santa Fe (1.30).</p>
			<p>
				<fig id="f1">
					<label>FIGURE 1</label>
					<caption>
						<title>Relative distribution of AMF genera in two agroecosystems of cacao.</title>
					</caption>
					<graphic xlink:href="0120-9965-agc-34-03-00385-gf1.png"/>
				</fig>
			</p>
			<p>
				<table-wrap id="t2">
					<label>TABLE 2</label>
					<caption>
						<title>Variables evaluated in the two agroecosystems.</title>
					</caption>
					<graphic xlink:href="0120-9965-agc-34-03-00385-gt2.png"/>
					<table-wrap-foot>
						<fn id="TFN2">
							<p>Means followed by different letters indicate significant differences according to the Tukey test (<italic>P</italic>0.05).</p>
						</fn>
						<fn id="TFN3">
							<label><sup>1</sup></label>
							<p> MC: mycorrhizal colonization; 2 Spores per g of soil.</p>
						</fn>
					</table-wrap-foot>
				</table-wrap>
			</p>
			<p>The bacterium that was used as control <italic>R. solanacearum</italic> did not produce indole-acetic acid. In contrast, all <italic>Pseudomo nas</italic> isolates did produce it, but the concentration produce was variable among them (<xref ref-type="fig" rid="f2">Fig. 2</xref>). The isolate P10 was the most active in this regard (79.9 µg mL<sup>-1</sup>) followed by P9, P3 and P8 (48.9-59.3 µg mL<sup>-1</sup>), and then by P1, P2, and P3 (29.5-38.9 µg mL<sup>-1</sup>). The less effective isolate were P4, P5 and P6 (20.2-25.0 µg mL<sup>-1</sup>).</p>
			<p>
				<fig id="f2">
					<label>FIGURE 2</label>
					<caption>
						<title>Indoleacetic acid produced by different isolates of fluorescent <italic>Pseudomonas</italic> sp. isolated from cacao rhizospheres; C = control ino culated with <italic>R. solanacearum.</italic> T1-T10 = number of isolated strains. Means with different letters indicate significant differences according to the Tukey test (P&lt;0.05).</title>
					</caption>
					<graphic xlink:href="0120-9965-agc-34-03-00385-gf2.png"/>
				</fig>
			</p>
			<p>The findings of this study coincide with those of <xref ref-type="bibr" rid="B39">Prieto et al. (2012</xref>) who found AMF species of <italic>Glomus, Scutellospora, Acaulospora</italic> and <italic>Gigaspora</italic> in cacao agroforestry systems placed in a TDF in Ecuador. However, these authors did not report <italic>Entrophospora</italic> genus. In a study by <xref ref-type="bibr" rid="B13">Cuenca and Meneses (1996</xref>) in Venezuela the genus most associated with cacao was <italic>Glomus,</italic> being <italic>G. etunicatum</italic> particularly prominent. According to <xref ref-type="bibr" rid="B44">Sieverding (1991</xref>), <italic>Glomus</italic> is one of the most competitive and effective AMF genus in with different botanical groups and different soil conditions. In this study, clearly <italic>Glomus</italic> is dominant in both agroecosys tems and in the case of any inoculation with AMF, species of <italic>Glomus</italic> should be considered. This was confirmed with the greenhouse results, in which <italic>Glomus</italic> was consistently effective to promote plant P uptake and growth (<xref ref-type="bibr" rid="B54">Zandavalli et al., 2004</xref>; <xref ref-type="bibr" rid="B32">Osorio 2011</xref>; <xref ref-type="bibr" rid="B41">Ramírez et al., 2013</xref>; Ramírez <italic>et al.,</italic> 2014; Ramírez <italic>et al.,</italic> 2015).</p>
			<p>The MC values reported here coincide with those from <xref ref-type="bibr" rid="B6">Bolívar et al. (2009</xref>), who found MC between 2.8 and 13.3% under natural conditions. The former value might be considered low, since <xref ref-type="bibr" rid="B14">Cuenca et al. (1991</xref>) reported MC values up to 69%. Meanwhile, in agroforestry systems in a TMF life zone in Ecuador, <xref ref-type="bibr" rid="B39">Prieto et al. (2012</xref>) reported that MC did not surpass 3.5%, while values were as low as 0.9%. Perhaps, the high levels of soil available P found in Santa Fe agroecosytems may restrict the extent of mycor rhizal colonization (<xref ref-type="bibr" rid="B36">Peters and Habte, 2001</xref>), while the low levels of this in Maceo may promote a high mycorrhizal colonization. Cuenca <italic>et al.</italic> (1991) reported that in soils with low nutrient availability, cacao plants are highly dependent on AMF. This is because under these conditions, the plant requires this positive symbiosis for the uptake of this nu trient (<xref ref-type="bibr" rid="B7">Bonfante and Genre, 2010</xref>; <xref ref-type="bibr" rid="B5">Barea and Pozo, 2013</xref>).</p>
			<p>
				<xref ref-type="bibr" rid="B12">Cuadros et al. (2011</xref>) reported that in field conditions MC depends largely on soil P content. <xref ref-type="bibr" rid="B28">López etal. (2007</xref>), <xref ref-type="bibr" rid="B50">Toro et al. (2008</xref>), and <xref ref-type="bibr" rid="B1">Azizah-Chulan and Martin (1992</xref>) reported that the recommended commercial dose of P fertilizers for cacao had negative effect on native AMF populations. They recommended adjusting the P fertilization management in order to promote the AMF symbiosis. On the other hand, <xref ref-type="bibr" rid="B49">Tena (2002</xref>) affirms that high levels of Ca and Mg (as those found in Santa Fe) may affect the AMF spores density and thus the symbiotic relationship with the host plant.</p>
			<p>Despite the presence of fluorescent <italic>Pseudomonas</italic> sp., we did not find any promoting effects on cacao plants in the greenhouse experiment. It is not clear if in the two agro-ecosystems they had a role on plant nutrition or growth, it has been reported that they are biocontrol agents and plant growth promoters (<xref ref-type="bibr" rid="B21">Hallmann et al., 1997</xref>; <xref ref-type="bibr" rid="B52">Van Veen et al., 1997</xref>; <xref ref-type="bibr" rid="B29">Lugtenberg and Kamilova, 2009</xref>). Notice that in cacao plants at Maceo the foliar P was as good as in Santa Fe, in despite of that the former one was grown in a P deficient soil. It may be explained by the high levels of MC, the role of this bacterium in those systems should be investigated.</p>
			<p>Uninoculated plants (control) showed a plant dry weigh of 150.9 g, which was significantly increased (+36%) only by <italic>Glomus</italic> inoculation. Other inoculation did not increase significantly the plant growth of cacao plant, included the co-inoculation G+P10 (<xref ref-type="fig" rid="f3">Fig. 3</xref>A).</p>
			<p>
				<fig id="f3">
					<label>FIGURE 3</label>
					<caption>
						<title>Variables evaluated in greenhouse conditions in cacao seed lings inoculated with an AMF. A: <italic>Acaulospora</italic> sp. G: <italic>Glomus</italic> sp. in combination with fluorescent <italic>Pseudomonas</italic> sp. (P10). Means with different letters indicate significant differences according to the Tukey test (P&lt;0.05).</title>
					</caption>
					<graphic xlink:href="0120-9965-agc-34-03-00385-gf3.png"/>
				</fig>
			</p>
			<p>Control plants exhibited a foliar P concentration of 0.43%, this was significantly higher when the mycorrhizal fungi were inoculated (<xref ref-type="fig" rid="f3">Fig. 3</xref>B). Inoculated plants with <italic>Acau-lospora</italic> had foliar P concentration of 0.67% and those inoculated with <italic>Glomus</italic> had a concentration even higher 0.92%, which represented relative increases of 56 and 114%, respectively. The inoculation with <italic>Pseudomonas</italic> sp. (P10) was ineffective to promote foliar P (0.51%). Moreover, the co-inoculation with P10 was not effective to increase the foliar P beyond that obtained with the AMF inoculation only. In this way, the foliar P concentration of plants treated with A+P10 was 0.73% (similar to A-inoculation) and with G+P10 was 0.86% (similar to G-inoculation).</p>
			<p>Uninoculated plants and those inoculated with P10 did not have mycorrhizal colonization (<xref ref-type="fig" rid="f3">Fig. 3</xref>C). In contrast, the plants inoculated with <italic>Acaulospora</italic> (without and with P10) showed a mycorrhizal colonization that ranged be tween 15.8-13.4%, respectively, which did not differ to each other. Otherwise, the inoculation with <italic>Glomus</italic> had values of mycorrhizal colonization significantly higher than the other with values that fluctuated between 32.5-37.9 %, without and with P10, respectively.</p>
			<p>Inoculation of the IMC-67 clone with <italic>Glomus</italic> sp. resulted in higher MC values than those reported by <xref ref-type="bibr" rid="B3">Ballesteros et al. (2004</xref>) <italic>(ca.</italic> 20%) with native <italic>Glomus</italic> and <italic>Acaulospora.</italic> Similarly, <xref ref-type="bibr" rid="B12">Cuadros et al. (2011</xref>) reported MC values of 84% with both AMF genera. These results indicate that the MC of cacao roots by AMF inoculated is variable. From our perspective, this variable (MC) may be secondary, and it is necessary to focus on the effectiveness of AMF inocula tion on plant nutrient uptake and growth or even better on crop yield.</p>
			<p>In this study it is clear that, at least for cacao seedlings, the use of AMF inoculation promote growth, as reported by <xref ref-type="bibr" rid="B1">Azizah-Chulan and Martin (1992</xref>). However, this effect seems to be species-dependent. Thus, species of <italic>Glomus</italic> must be included in a commercial inoculum intended to promote seedling growth and P uptake. The benefits ob tained with <italic>Glomus</italic> inoculation are quite relevant since the P foliar was twice higher with this than in control plants. On the other hand, the effect of <italic>Pseudomonas</italic> sp. P10 was null alone or in combination with AMF.</p>
		</sec>
		<sec sec-type="conclusions">
			<title>Conclusions</title>
			<p>In both cacao agroecosystems, AMF and <italic>Pseudomonas</italic> were detected. The same AMF genera was found but in different relative distribution. The AMF genus <italic>Glomus</italic> was predominant in both agroecosystems. On the other hand, the number of CFU of <italic>Pseudomonas</italic> spp. was similar in both agroecosystems. In the greenhouse, cacao seedlings had higher levels of foliar P when inoculated with AMF <italic>(Acaulospora</italic> and <italic>Glomus)</italic> than uninoculated plants, but the effect was higher with <italic>Glomus</italic> species. Plant growth was only significantly promoted by <italic>Glomus</italic> inoculation and not by <italic>Acaulospora.</italic> The inoculation with the isolate P10 of <italic>Pseudomonas</italic> did not promote plant growth and P uptake in mycorrhiza-free or mycorhizal plants.</p>
		</sec>
	</body>
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